PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00002339_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 137aa    MW: 14983.3 Da    PI: 10.6623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00002339_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.0002491113123
                                       EEETTTTEEESSHHHHHHHHHHT CS
                           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                       ++C++Cg+ F     L  H+rtH
  FANhyb_icon00002339_a.1.g00001.1  91 HECTICGMEFAVGQALGGHMRTH 113
                                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.23E-940113No hitNo description
SMARTSM003552.64264IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-104266IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5984269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.0E-589114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.72391118IPR007087Zinc finger, C2H2
SMARTSM003550.08191113IPR015880Zinc finger, C2H2-like
PfamPF139124.4E-991115IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MKRAREDEQQ TDDLVSCLML LSKLDRNHSS SIRKQPSSGR IFACKTCNRE FLSFQALGGH  60
RASHKKPKLD GGAANLLQLG QPSSPKKPKK HECTICGMEF AVGQALGGHM RTHKDVMSSA  120
AERIRAAAVP VLKKSNS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294603.11e-87PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A2P6QIB41e-81A0A2P6QIB4_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004294603.15e-87(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-36C2H2 family protein