PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00002569_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 77aa    MW: 9167.74 Da    PI: 8.919
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00002569_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-17651348
                                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                      +WT+eEdell++ ++ +G g W+ ++ + g++R++k+c++rw++yl
  FANhyb_icon00002569_a.1.g00001.1  6 AWTKEEDELLKQFIEIHGEGKWHHVPLKSGLNRCRKSCRLRWLNYL 51
                                      7********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.999155IPR017930Myb domain
SMARTSM007176.0E-13353IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-20654IPR009057Homeodomain-like
CDDcd001671.08E-10651No hitNo description
SuperFamilySSF466899.62E-21677IPR009057Homeodomain-like
PfamPF002492.4E-15651IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-65577IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MSLLCAWTKE EDELLKQFIE IHGEGKWHHV PLKSGLNRCR KSCRLRWLNY LKPNIKRGEF  60
AEDEVDLIIR LHKLLGN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302217.11e-44PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV99e-34MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2I6UI633e-45A0A2I6UI63_FRAAN; R2R3-MYB transcription factor MYB10-2
TrEMBLB5STZ94e-45B5STZ9_FRAVE; R2R3 MYB transcription factor
STRINGXP_004302217.14e-44(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-36myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]