PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00002889_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25600 Da    PI: 8.7712
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00002889_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.93.1e-1910461551
                                      HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                            SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                      kR +++lKKA+ELS+LCdaevavi f s+gkl+eyss
  FANhyb_icon00002889_a.1.g00001.1 10 KRHATLLKKAQELSILCDAEVAVIAFTSDGKLHEYSS 46
                                      9**********************************96 PP
2K-box20.42.2e-0879170791
                             K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee...l 80 
                                       +  +e++ +s+++ l  L+ +   L+  + ++ G+ L+ Ls +eL  Leq+ + +l ++ +kK+ell++ +++   l
  FANhyb_icon00002889_a.1.g00001.1  79 TVSNEEHPKSSDEVLHALEGQHAALKLDKLRRTGKALDGLSREELYALEQEQKGALVSVLKKKEELLVRLLKQkeeL 155
                                       33566777777778899*********999*************************************97655441112 PP

                             K-box  81 ....qkkekelqeen 91 
                                           +++e+++ +e+
  FANhyb_icon00002889_a.1.g00001.1 156 lvrsKEREHQAIQEK 170
                                       331133333333444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-7747IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-18968IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-131025IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.3571048IPR002100Transcription factor, MADS-box
PfamPF003191.1E-141044IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-132546IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.56986183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MPETEILGRK RHATLLKKAQ ELSILCDAEV AVIAFTSDGK LHEYSSNRVE HTLSRYKNYK  60
GRRTKMEPNH QLEERRRGTV SNEEHPKSSD EVLHALEGQH AALKLDKLRR TGKALDGLSR  120
EELYALEQEQ KGALVSVLKK KEELLVRLLK QKEELLVRSK EREHQAIQEK EILRRGFEER  180
RYPVFNEGDT LSSTVPREQY GFVHKLESCC TFEFSSTGYG H
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004300888.11e-117PREDICTED: truncated transcription factor CAULIFLOWER A-like
TrEMBLA0A2P6QDU04e-74A0A2P6QDU0_ROSCH; Putative transcription factor MADS-MIKC family
STRINGXP_004300888.11e-116(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3250322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.17e-17AGAMOUS-like 15