PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00003056_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 294aa    MW: 32594.1 Da    PI: 10.1481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00003056_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12130174554
                                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                       h + Er+RR+++N++f+ L++llP+      +K +Ka++L+ A +Y+ sL
  FANhyb_icon00003056_a.1.g00001.1 130 HMISERKRREKLNESFHSLKSLLPPG-----TKKDKASVLTTARDYLTSL 174
                                       8899********************97.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-16127194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.14E-11127178No hitNo description
SuperFamilySSF474594.32E-17127193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10130174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-14131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQAISRMRGN IHLPAPEIED AEITRAILAV LTSPSSSPSP AISPHQLSSD SAPSPGHHGL  60
LNPKPCSAFK HYISSPLGPR TQTKGAANLG VRKQTMVKRS ISFLRSLNLL RIRDQSMQAA  120
TRPTTSQLHH MISERKRREK LNESFHSLKS LLPPGTKKDK ASVLTTARDY LTSLKAQVDE  180
LSKRNQQLEA AARLITKEED DEEEEAGSSS TERVSVTLTH VSGSTRDQNQ QIVALQVIVR  240
SGECSTEDIV IRILEFLKQV NNMSLMSMEA STWKTALHPN INRVVLRLRV DDDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138ERKRRE
2134139RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288955.20.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A2P6RK961e-164A0A2P6RK96_ROSCH; Putative transcription factor bHLH family
STRINGXP_004288955.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-42bHLH family protein