PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00003557_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 259aa MW: 29869.4 Da PI: 4.692

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00003557_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42	3e-13	118	245	1	89
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk............................ 47 kfY YA vGFs r k+ k + + + +r ++Csk+g++++ kk FANhyb_icon00003557_a.1.g00001.1 118 KFYAYYAFVVGFSRRCFKHDKAviNGVECVRRRAWCCSKQGYEDSAAKKkrkkvyetdklvteeaanekeeecedat 194 6*************999999544445688999*****999888899********************* PP FAR1 48 ........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +++ r + +rtgC+a ++v++++ + ++ev +++ +HnH+l FANhyb_icon00003557_a.1.g00001.1 195 tlnkkkkkMKTALRGIKYSRTGCEAVFQVRLNRrTMEYEVVSFVPDHNHDL 245 9976544333333466789*********999************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.6E-11	118	245	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDDGVEMDET DESGLRFSDE KYHDIVISAE DEDCLFEDAG KDTLEIMEDP VILIEDEEVG 60 RDKSDEHGNS KSVGADDITD ETIFSSEWYA ALKGKNMKLL RFEDVKDIIF SSLAEADKFY 120 AYYAFVVGFS RRCFKHDKAV INGVECVRRR AWCCSKQGYE DSAAKKKRKK VYETDKLVTE 180 EAANEKEEEC EDATTLNKKK KKMKTALRGI KYSRTGCEAV FQVRLNRRTM EYEVVSFVPD 240 HNHDLPNRMR DSFYDLAGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	169	RRRAWCCSKQGYEDSAAKKKRKK
2	165	169	KKRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292007.1	1e-144	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_004292007.1	1e-144	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25686	2	3