PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00003816_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 134aa    MW: 15752.7 Da    PI: 9.5335
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00003816_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-09781132055
                                       HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                          Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                       +k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
  FANhyb_icon00003816_a.1.g00001.1  78 YKWPYPTEVDKMTLAQVTGLDQKQINNWFINQRKRH 113
                                       4679*****************************985 PP
2ELK41.23.5e-143354122
                               ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                                      ELK+ LlrKYsgy+++LkqEFs
  FANhyb_icon00003816_a.1.g00001.1 33 ELKDKLLRKYSGYISTLKQEFS 54
                                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037891.3E-113354IPR005539ELK domain
PROSITE profilePS5121311.0863353IPR005539ELK domain
SMARTSM011887.1E-83354IPR005539ELK domain
PROSITE profilePS5007112.16353116IPR001356Homeobox domain
SuperFamilySSF466898.13E-2055126IPR009057Homeodomain-like
SMARTSM003891.0E-1155120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-2858118IPR009057Homeodomain-like
CDDcd000865.91E-1165117No hitNo description
PfamPF059203.5E-1773112IPR008422Homeobox KN domain
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
DAPAGNSSDY EDMSGGEIDV QDSDHQQRNV NHELKDKLLR KYSGYISTLK QEFSQKKKKG  60
KLPKDAKQIL ADWWNLHYKW PYPTEVDKMT LAQVTGLDQK QINNWFINQR KRHWKPSENM  120
QFAVMESLYG PRPV
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266984.14e-91homeobox protein knotted-1-like 6-like
SwissprotQ84JS62e-49KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLF5A6B41e-89F5A6B4_FRAVE; Knotted-like homeobox KNOX4
STRINGXP_004298960.12e-94(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.22e-47KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]