PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00003944_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 250aa    MW: 27581.4 Da    PI: 8.1265
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00003944_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.8e-183782147
                                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                      +g+W++eEd  l ++v+++G+++W++I+r++  gR++k+c++rw + 
  FANhyb_icon00003944_a.1.g00001.1 37 KGPWSAEEDRVLTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 82
                                      79*****************************9.***********985 PP
2Myb_DNA-binding54.62.6e-1791133347
                                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                       ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  FANhyb_icon00003944_a.1.g00001.1  91 PFSQAEDETILAAHARYGNR-WATIARLLP-GRTDNAVKNHWNST 133
                                       79******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.3943287IPR017930Myb domain
SuperFamilySSF466892.84E-3135130IPR009057Homeodomain-like
SMARTSM007175.5E-163685IPR001005SANT/Myb domain
PfamPF002494.9E-173782IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-243890IPR009057Homeodomain-like
CDDcd001675.82E-153981No hitNo description
SMARTSM007175.2E-1588136IPR001005SANT/Myb domain
PROSITE profilePS5129421.18688138IPR017930Myb domain
PfamPF002492.9E-1491133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2391138IPR009057Homeodomain-like
CDDcd001676.88E-1291134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDANIAMNMC SSSTSTSDSS SSESSQPRNP NKAERIKGPW SAEEDRVLTR LVERYGPRNW  60
SLISRYIKGR SGKSCRLRWC NQLSPTVQHR PFSQAEDETI LAAHARYGNR WATIARLLPG  120
RTDNAVKNHW NSTLKRRVRE PQEHQELDHH GEGNIGNAAI EVMMLGNGSS SASAASGRNG  180
SMDLDDPLTE LTLATPGIGS SVVSASEQQH HRSSSESFPP AGFWDVMRGV IAREVRDYVS  240
SSYTETSGLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-43341381105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291141.11e-160PREDICTED: transcription factor MYB44-like
SwissprotO231601e-57MYB73_ARATH; Transcription factor MYB73
TrEMBLF2QKY21e-147F2QKY2_ROSHC; Putative MYB transcription factor
STRINGXP_004291141.11e-159(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50743256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.15e-59myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]