PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00004064_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family SBP
Protein Properties Length: 190aa    MW: 20526.8 Da    PI: 7.8313
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00004064_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP255e-08168190123
                                       --SSTT-----TT--HHHHHTT- CS
                               SBP   1 lCqvegCeadlseakeyhrrhkv 23 
                                       +CqvegC++ l +akeyhrrhkv
  FANhyb_icon00004064_a.1.g00001.1 168 RCQVEGCQVSLVSAKEYHRRHKV 190
                                       6*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-8163190IPR004333Transcription factor, SBP-box
PROSITE profilePS5114110.998166190IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-7167190IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MEMFGQTIGG RAGQNGNNAN LAWDIWEMNN GNSNSNGNND ILYMTAATAA VTIAEPPSGS  60
TASSEASLGH ALMHNNDGVQ AVEQHFQNFY GGDHHHHGRL HGSQYLPDPH LMCLKLGKRH  120
YFEDAAPPLL DHHHRHVAGF PLAMKRGKNL YGAGGGGGAS TSSLKVPRCQ VEGCQVSLVS  180
AKEYHRRHKV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308484.11e-118PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A2P6SFK87e-81A0A2P6SFK8_ROSCH; Putative transcription factor SBP family
STRINGXP_004308484.11e-117(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.41e-09squamosa promoter binding protein-like 10