PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00004089_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 90aa    MW: 10355 Da    PI: 9.7525
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00004089_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.54e-0915441645
                                      HHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                            SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgk 45
                                      R   + KKA+E S+LC+++v++i f ++++
  FANhyb_icon00004089_a.1.g00001.1 15 RERKLCKKANERSILCGTDVCMITFKPHNT 44
                                      777899******************987664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500668.507139IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-10868IPR002100Transcription factor, MADS-box
PfamPF003192.6E-81549IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MVKVPSFRRK LLRDRERKLC KKANERSILC GTDVCMITFK PHNTKPETWP QEQAKAMVMQ  60
YQEGTAKHPQ NELIGDDEAK LASLEAKLQA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470562.14e-47PREDICTED: uncharacterized protein LOC105353257
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3254822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.21e-06M-type_MADS family protein