PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00004615_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 182aa    MW: 19831.7 Da    PI: 4.3596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00004615_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.9e-152441055
                               AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                      +++g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  FANhyb_icon00004615_a.1.g00001.1  2 RSWGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAARAIKG 44
                                      57**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.533152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-27153IPR001471AP2/ERF domain
CDDcd000182.07E-26154No hitNo description
SMARTSM003801.3E-27158IPR001471AP2/ERF domain
PfamPF008471.6E-9244IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MRSWGKWVSE IREPRKKSRI WLGTYPTAEM AARAHDVAAR AIKGASAYLN FPELAQTLPQ  60
PASASPKDIQ AAAAKAASAF EEVKKCGAEV EEEEEQATQP SKDEETTTTT ANTSTSTSNS  120
TACSSSSSSV DYDDKLFDLP DLFMDGTNGS DQFCFSSSSS SSWHLCAADT GFRLEEPFLW  180
EY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-122532173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307005.15e-93PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ76e-58ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A3Q8TBF38e-93A0A3Q8TBF3_FRAAN; Transcription factor ERF21
STRINGXP_004307005.12e-92(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-32ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]