PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00004937_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 200aa    MW: 23066.9 Da    PI: 10.8826
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00004937_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.3e-0690110323
                                       ETTTTEEESSHHHHHHHHHHT CS
                           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                       C  Cg++F +k+ L++H r+H
  FANhyb_icon00004937_a.1.g00001.1  90 CRVCGRRFYTKEKLVNHFRVH 110
                                       *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-587114No hitNo description
PROSITE profilePS5015711.28188115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-490113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MQPKWSQYLF IRHLSQPSVA IFWDLETRPP KSVSPFEAAG RLKTAASSFG LVRHMIAYAP  60
RHACNSVPQV VGKIRKERNR VVIRDEANIC RVCGRRFYTK EKLVNHFRVH ESEHMKRLSQ  120
IESASGSRRV KLVGKYAMKM EKYRNAVRDV MIPKQGNGLG SELKRAGFWV RSLPDKPPAG  180
FVVVSHDIVE MMDERRFECL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463765.11e-135PREDICTED: uncharacterized protein LOC101312061
RefseqXP_011463766.11e-135PREDICTED: uncharacterized protein LOC101312061
RefseqXP_011463767.11e-135PREDICTED: uncharacterized protein LOC101312061
RefseqXP_011463769.11e-135PREDICTED: uncharacterized protein LOC101312061
TrEMBLA0A2P6P7Z21e-113A0A2P6P7Z2_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004300722.11e-128(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.14e-64C2H2 family protein