PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00004954_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 168aa    MW: 18649.6 Da    PI: 9.3423
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00004954_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260105.25.6e-337103298
                            DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                       CaaC+++r kC +dC++apyfpa+ +++++n+hk+FG s++ kll+++p+++r++am+ ++ eA +r+ dPv G+++
  FANhyb_icon00004954_a.1.g00001.1   7 CAACRFKRCKCGPDCPMAPYFPAHMHHHYKNAHKVFGESHIKKLLRSVPPHNRSTAMKHIIAEAGIRVADPVGGSYA 83 
                                       ***************************************************************************** PP

                            DUF260  79 vilklqqqleqlkaelallk 98 
                                       +i++lq ++++++++l++l+
  FANhyb_icon00004954_a.1.g00001.1  84 LIRNLQLKIAEEEEKLHRLR 103
                                       ***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.3085106IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-317103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKKHQTCAAC RFKRCKCGPD CPMAPYFPAH MHHHYKNAHK VFGESHIKKL LRSVPPHNRS  60
TAMKHIIAEA GIRVADPVGG SYALIRNLQL KIAEEEEKLH RLRDVLSVFR GGGSGDGVVA  120
QGVVQKQGCI VPGGFLHALF LQEQGNNMFV RDEVVPEHDV ESIPGKEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-20712412129LOB family transfactor Ramosa2.1
5ly0_B1e-20712412129LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292797.11e-113PREDICTED: LOB domain-containing protein 22-like isoform X1
TrEMBLA0A2P6Q1A33e-71A0A2P6Q1A3_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004292797.11e-113(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-27LOB domain-containing protein 22