PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00005132_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 140aa    MW: 15852.5 Da    PI: 6.2705
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00005132_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.33.9e-2145134190
                              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgk 75 
                                       kfY +Y+  vGF  r++ + +s  +g+i +r++vCskeg+r+++  + +   r++r++tr++C a+++++ ++ +g+
  FANhyb_icon00005132_a.1.g00001.1  45 KFYFAYSAAVGFGCRRDDKGES--KGRIRWRQWVCSKEGTRDRKYLEaDGLGRTPRKQTRVNCAARFRINYNDtSGV 119
                                       6****************99998..899**************9998775678999*******************9*** PP

                              FAR1  76 wevtkleleHnHela 90 
                                       ++v+k++ eHnHela
  FANhyb_icon00005132_a.1.g00001.1 120 YVVKKFDPEHNHELA 134
                                       *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1845134IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MDASENENQA HEGVEDVAVD VPGFGSLKIA DVRDLTFETV EEAEKFYFAY SAAVGFGCRR  60
DDKGESKGRI RWRQWVCSKE GTRDRKYLEA DGLGRTPRKQ TRVNCAARFR INYNDTSGVY  120
VVKKFDPEHN HELATGNQVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004298058.13e-80PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004298058.11e-79(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1575949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.19e-13FAR1 family protein