PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00005182_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 175aa    MW: 19730.2 Da    PI: 7.0293
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00005182_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.52.4e-13901691294
                                       HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                                B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                         g l++p  f +++     +++ ++l++ ++ + W v + y+++ +r  l++GW +Fv++n+L  gD +vF l+++
  FANhyb_icon00005182_a.1.g00001.1  90 PGGYLYVPSVFSKTYLAT--QPTHIMLQTvSNKEPWCVDMHYERSACR--LRAGWPGFVRSNKLVLGDACVFVLKDS 162
                                       557799999999999533..6778*****555589*****88777776..***********************9887 PP

                                       SEE..EE CS
                                B3  88 sefelvv 94 
                                       + f + v
  FANhyb_icon00005182_a.1.g00001.1 163 NAFLFDV 169
                                       8874444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-1773167IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1874170IPR015300DNA-binding pseudobarrel domain
CDDcd100176.90E-1378173No hitNo description
PROSITE profilePS5086312.16779173IPR003340B3 DNA binding domain
SMARTSM010193.0E-880175IPR003340B3 DNA binding domain
PfamPF023621.6E-1185167IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
ILEDCLRGSR NSGSVSRKKN RNNSTGKPEM DDDNDEGDVG SEEGEDEDNH SRRMHPVTSS  60
IRKEIALQRA KDYEPALPHF VIAIRTSSIP GGYLYVPSVF SKTYLATQPT HIMLQTVSNK  120
EPWCVDMHYE RSACRLRAGW PGFVRSNKLV LGDACVFVLK DSNAFLFDVV FYRAT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011465440.11e-128PREDICTED: B3 domain-containing protein LOC_Os12g40090-like isoform X2
TrEMBLA0A2P6RMX21e-61A0A2P6RMX2_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004301865.11e-127(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-14related to vernalization1 1