PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00005241_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 308aa    MW: 34263.6 Da    PI: 7.7225
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00005241_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.85.7e-084588749
                                      HHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSEEEEE CS
                            SRF-TF  7 snrqvtfskRrngilKKAeELSv.LCdaevaviifsstgklyey 49
                                       +  v+fskRr g++ KA  L+    d++ av+++s+ g+ y +
  FANhyb_icon00005241_a.1.g00001.1 45 AKIDVSFSKRRRGLFGKAARLCKdFDDTRLAVLVVSKAGRSYAF 88
                                      5668******************74789************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003196.2E-74388IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.8584392IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-844106IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MHRKQEKKTV RRERRRCKQH REERGRREHT LEEEENCRQT KIDKAKIDVS FSKRRRGLFG  60
KAARLCKDFD DTRLAVLVVS KAGRSYAFGH SSVNEVLNDI YHIQPTTTKS AEGLNLMRQL  120
QEKKKVMGVK EEIENEMMAC QTVEGLASLR EKYLKLDEEI NKKLRYCSSK ETSFEGGVMD  180
QKYNIGIVNV GDDGRLIGSG YESSYTDLLS AGGLRLEGDT DGKGCCVGLG QRDATTGIIS  240
NPLLASSESN YGVHDGGLTI NGTFDGNGYC SLGLCHDVGN TSLRDPITTG ISDNFWLELG  300
LGLGHEVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.12e-10AGAMOUS-like 28