PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00005989_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 90aa MW: 9971.01 Da PI: 8.4639

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00005989_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	7.1e-06	63	81	2	20
HHHHHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsaf 20 r +h+ E+rRR++iN+++ FANhyb_icon00005989_a.1.g00001.1 63 RSKHSVTEQRRRSKINERY 81 899**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.6E-6	60	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MRSAGKGSQD EDEYEDDDFG SKKDGPSSNS SNPNSKAIAI VLCIGFMIGE ADAKSNDKAS 60 AIRSKHSVTE QRRRSKINER YGLVVQYLKW

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018456859.1	2e-20	PREDICTED: transcription factor BIM2
Swissprot	Q9CAA4	4e-19	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A078H6T1	6e-19	A0A078H6T1_BRANA; BnaC06g29910D protein
TrEMBL	A0A1J3CM67	6e-19	A0A1J3CM67_NOCCA; Transcription factor BIM2
TrEMBL	A0A1J3IPE8	7e-19	A0A1J3IPE8_NOCCA; Transcription factor BIM2
TrEMBL	A0A3P6BF88	6e-19	A0A3P6BF88_BRACM; Uncharacterized protein
TrEMBL	A0A3P6FZM7	7e-19	A0A3P6FZM7_BRAOL; Uncharacterized protein (Fragment)
STRING	Bra004355.1-P	1e-19	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF32622	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-17	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]