PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00006293_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

NAC

Protein Properties

Length: 285aa MW: 32620.7 Da PI: 5.2211

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00006293_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.8	1.7e-26	8	137	3	128
NAM 3 pGfrFhPtdeelvveyLkkk.vegkkleleevikevdiy.kvePwdLpk....kvkaeekewyfFskrdkkyatgkr 73 +GfrFhPtd elv +yL+++ v g++++ + v++ diy ++ePw + ++ +e + +yfF++r+k +++ kr FANhyb_icon00006293_a.1.g00001.1 8 VGFRFHPTDRELVAYYLHNRaVMGDQFQSSFVFNCPDIYgQTEPWIIWDlfggNLIEEGEALYFFTQRKKLNPKAKR 84 7**************98846777788855566669567988533445444567788*********** PP NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +r++ sg+W+a+ kd v + +++++g+k+ + + kg++p ++ W+m+ey+l FANhyb_icon00006293_a.1.g00001.1 85 FHRKVGSGTWSAQSKDDVVSA-DHHVIGTKREFRYEKGSDPL-QNGVWLMQEYEL 137 **********9888877.999*********9999.89******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.27E-27	3	150	IPR003441	NAC domain
PROSITE profile	PS51005	25.898	6	151	IPR003441	NAC domain
Pfam	PF02365	3.5E-18	8	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MAYPPLGVGF RFHPTDRELV AYYLHNRAVM GDQFQSSFVF NCPDIYGQTE PWIIWDLFGG 60 NLIEEGEALY FFTQRKKLNP KAKRFHRKVG SGTWSAQSKD DVVSADHHVI GTKREFRYEK 120 GSDPLQNGVW LMQEYELTSL NDMVLCTLRK SPRPPAETAS SSTAAPPLNQ SVDENFGNKM 180 KRKMNFCEEE DEEDSCKRKK LEPPKPSYLY EQHFDVDKLF DFDHQSKTPD HMVSVAQPFV 240 QVEKSNDDLI MPSLISDDES LEAVQVMASV GQSIYAATHD HLQIV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-16	1	150	15	164	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-16	1	150	15	164	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-16	1	150	15	164	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-16	1	150	15	164	NO APICAL MERISTEM PROTEIN
3swm_A	7e-16	1	150	18	167	NAC domain-containing protein 19
3swm_B	7e-16	1	150	18	167	NAC domain-containing protein 19
3swm_C	7e-16	1	150	18	167	NAC domain-containing protein 19
3swm_D	7e-16	1	150	18	167	NAC domain-containing protein 19
3swp_A	7e-16	1	150	18	167	NAC domain-containing protein 19
3swp_B	7e-16	1	150	18	167	NAC domain-containing protein 19
3swp_C	7e-16	1	150	18	167	NAC domain-containing protein 19
3swp_D	7e-16	1	150	18	167	NAC domain-containing protein 19
4dul_A	7e-16	1	150	15	164	NAC domain-containing protein 19
4dul_B	7e-16	1	150	15	164	NAC domain-containing protein 19

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	199	KRKMNFCEEEDEEDSCKRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004308530.1	0.0	PREDICTED: NAC transcription factor 29-like
TrEMBL	A0A2P6SC55	1e-70	A0A2P6SC55_ROSCH; Putative transcription factor NAM family
STRING	XP_004308530.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17610	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62380.1	2e-20	NAC-domain protein 101