PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00006295_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 179aa    MW: 19769 Da    PI: 4.5082
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00006295_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-19454155
                               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                      + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  FANhyb_icon00006295_a.1.g00001.1  4 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALSIKG 54
                                      68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-13454IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22563IPR016177DNA-binding domain
PROSITE profilePS5103223.13562IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-32563IPR001471AP2/ERF domain
SMARTSM003805.1E-36568IPR001471AP2/ERF domain
CDDcd000183.09E-33664No hitNo description
PRINTSPR003671.3E-10617IPR001471AP2/ERF domain
PRINTSPR003671.3E-102844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
SKHPVYRGVR MRNWGKWVSE IREPRKKSRI WLGTFSTPEM AARAHDVAAL SIKGNSAILN  60
FPELAELLPR PESLHPPDIQ AAAAKAAAMV HLDSTTTTSS SSTSSSSSSS EGLESGEDEL  120
GEIVELPNIE DSFNSGESRS EFILVNDTVD IGWLYDHPPF MGLDHFEEDL VSWDIQMIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-191621072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466674.11e-128PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ391271e-51TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A3Q8TD751e-106A0A3Q8TD75_FRAAN; Transcription factor ERF24
STRINGXP_004302874.11e-128(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]