PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00006407_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 198aa    MW: 22726.2 Da    PI: 6.1494
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00006407_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.11e-10581381295
                                       HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE CS
                                B3  12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkl 84 
                                       +   l +p +f +++   ++kk++   +   d  +rsWev +  r++ + +vl++GWk+Fv++   + e+  +vF++
  FANhyb_icon00006407_a.1.g00001.1  58 NDTELEIPLSFSNKYmveDNKKHG--SVH-LDGYNRSWEVSV--RRRHDFVVLGRGWKKFVRDVIQDyEKACIVFEY 129
                                       5566899****9999875444444..344.66789*******..*******************87776788889999 PP

                                       -SSSEE..EEE CS
                                B3  85 dgrsefelvvk 95 
                                       +g ++f  +v+
  FANhyb_icon00006407_a.1.g00001.1 130 KGYMSF--TVR 138
                                       888888..555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-1042140IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-1243141IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.82747143IPR003340B3 DNA binding domain
PfamPF023626.7E-858137IPR003340B3 DNA binding domain
CDDcd100171.14E-762140No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
HDLATLIGHD FARLLILASP VYTEPVSIPF KFLLLSMEKL SPNDLPFFLA KFDKAGINDT  60
ELEIPLSFSN KYMVEDNKKH GSVHLDGYNR SWEVSVRRRH DFVVLGRGWK KFVRDVIQDY  120
EKACIVFEYK GYMSFTVRAF YDDGNIVVDV PLNMSHLSQE CLGGFSEPGP EFLMPITSVA  180
GHPMVIFQTL AFSLWFFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_004309304.15e-77(Fragaria vesca)