PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00006645_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 214aa MW: 24178.2 Da PI: 9.9752

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00006645_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.9	4.2e-30	6	105	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyG 75 +Ca+C++ r kC++dC lapyfpa+ ++kf+n+ ++FG+s ++kll++l +++r++am+ ++ eA++r+ dPv G FANhyb_icon00006645_a.1.g00001.1 6 KCASCRHSRTKCKQDCLLAPYFPAHMHQKFQNAYQVFGRSYITKLLHNLneTPQKRNIAMKNIIAEADIRIADPVGG 82 5**********************************************766788****************** PP DUF260 76 avgvilklqqqleqlkaelallk 98 +++v+++ +l++l+ ++a+++ FANhyb_icon00006645_a.1.g00001.1 83 SYRVVKQQCADLSRLQWKVAQQE 105 ****99999999988777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.298	5	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-27	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MKNYQKCASC RHSRTKCKQD CLLAPYFPAH MHQKFQNAYQ VFGRSYITKL LHNLNETPQK 60 RNIAMKNIIA EADIRIADPV GGSYRVVKQQ CADLSRLQWK VAQQELELQQ LRRQVNANVA 120 MAQPSLYQEQ GNIVPPRTQQ EQGYRNLGEQ IGNASQGQGN FAQGFHHAPL HQGEGNFVQG 180 YGQRIRQEQA SIDAQSRAYV HPPSPSSSTA SSRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-16	7	108	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-16	7	108	12	111	LOB family transfactor Ramosa2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004292796.2	1e-123	PREDICTED: LOB domain-containing protein 7-like
TrEMBL	A0A2P6Q1C2	2e-63	A0A2P6Q1C2_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004292796.1	6e-97	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF32657	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	2e-23	LOB domain-containing protein 7