PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00006979_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LFY
Protein Properties Length: 93aa    MW: 10394.8 Da    PI: 3.994
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00006979_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY102.75.8e-32189338113
                           FLO_LFY  38 eaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaav 113
                                       + ++aaa +++  lee+f+ayGvry  +a iaelGftvstL++mkdeeldd+m+s+s+  +++llvGeryGikaav
  FANhyb_icon00006979_a.1.g00001.1  18 APQQAAAGYSVLPLEEMFRAYGVRYHVAATIAELGFTVSTLLEMKDEELDDMMNSVSQFSQVELLVGERYGIKAAV 93 
                                       4566777888999**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.6E-262393IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MDPYSITASL FQWDFSFAPQ QAAAGYSVLP LEEMFRAYGV RYHVAATIAE LGFTVSTLLE  60
MKDEELDDMM NSVSQFSQVE LLVGERYGIK AAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ude_A6e-192293273GINLFY PROTEIN
4ude_B6e-192293273GINLFY PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460285.15e-59PREDICTED: protein UNIFOLIATA-like
SwissprotO040641e-30FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A184XYZ39e-41A0A184XYZ3_FRAAN; LEAFY-like protein 1
STRINGcassava4.1_031323m1e-32(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.15e-27floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]