PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00008197_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

M-type_MADS

Protein Properties

Length: 64aa MW: 7358.6 Da PI: 11.5499

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00008197_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.7	4e-20	20	55	2	37
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevav 37 ri+n++ rqvtfskRrng+lKKA+ELS+LC++ ++ FANhyb_icon00008197_a.1.g00001.1 20 RIDNSTSRQVTFSKRRNGLLKKAKELSILCEILTSL 55 8******************************97776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.862	11	56	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-19	11	56	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.2E-19	11	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-16	13	33	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-16	20	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-16	33	48	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 64 aa Download sequence Send to blast
KSEREIAVTR MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCE ILTSLVDEWR 60 SQGV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269\|PubMed:23463009}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025878665.1	2e-20	MADS-box transcription factor 57 isoform X3
Refseq	XP_028109973.1	3e-20	MADS-box transcription factor 23-like
Swissprot	Q6Z6W2	3e-20	MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBL	A0A438GU85	3e-19	A0A438GU85_VITVI; MADS-box transcription factor ANR1
STRING	VIT_03s0097g00160.t01	6e-20	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	3e-21	AGAMOUS-like 44

Publications ? help Back to Top
Guo S, et al. The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun, 2013. 4: p. 1566 [PMID:23463009] Puig J, et al. Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice. Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70 [PMID:23466806] Yu C, et al. The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice. PLoS ONE, 2014. 9(8): p. e105597 [PMID:25140876] Wang H, et al. A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway. Plant Physiol., 2016. 170(4): p. 2365-77 [PMID:26858364]