PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00008516_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 117aa    MW: 13716.1 Da    PI: 4.0524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00008516_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.7e-122751898
                                      --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                                B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                                      +p +f+ + +g+ ++  + +le+ s  sW+v +  ++ +++++l++GW+eFv  n Lk g+ v++++ g+ +f  +v +
  FANhyb_icon00008516_a.1.g00001.1  2 IPQEFCWNSDGVVPQ--QCRLETMS-GSWNVDV--KRIGREIFLEEGWEEFVVGNSLKLGEYVTLHYYGHAKF--FVEI 73
                                      899***999888655..58888855.59*****..*******************************9987666..8888 PP

                                      E- CS
                                B3 97 fr 98
                                      + 
  FANhyb_icon00008516_a.1.g00001.1 74 YG 75
                                      75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.069177IPR003340B3 DNA binding domain
PfamPF023623.2E-9274IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-11278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-14279IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
QIPQEFCWNS DGVVPQQCRL ETMSGSWNVD VKRIGREIFL EEGWEEFVVG NSLKLGEYVT  60
LHYYGHAKFF VEIYGHNHCE RSKASKTDRF LEDEDEDEDD VIIIDSDSDS DDVLMWF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308415.24e-62PREDICTED: B3 domain-containing protein At1g16640-like
TrEMBLA0A2P6R2S67e-39A0A2P6R2S6_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004308415.11e-61(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2564123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.13e-12B3 family protein