PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00009116_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 158aa MW: 17488.4 Da PI: 9.8897

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00009116_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.2	8.9e-29	108	157	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 rlrWtp+LH rF++ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ FANhyb_icon00009116_a.1.g00001.1 108 SRLRWTPDLHLRFIHAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQ 157 69************************************************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.023	104	158	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-25	104	157	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-13	105	157	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-20	107	158	IPR006447	Myb domain, plants
Pfam	PF00249	6.8E-9	109	157	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MFISRSSNTE MPLRSSKTEK RSMKKSSEGT SQAPEASLSS SSQSKKERDV DEEKEEEDEE 60 VVDKDSQQQP SSKNGGVSSS SSTIEENEKS KGASGGGSVR QYVRSKNSRL RWTPDLHLRF 120 IHAVERLGGQ ERATPKLVLQ LMNIKGLSIA HVKSHLQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	108	157	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	108	157	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	108	157	2	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	108	157	2	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	108	157	2	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	108	157	2	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	108	157	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	108	157	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	108	157	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	108	157	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	108	157	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	108	157	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307667.1	2e-73	PREDICTED: uncharacterized protein LOC101309095
TrEMBL	A0A2P6SLF2	1e-48	A0A2P6SLF2_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004307667.1	6e-73	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-31	G2-like family protein