PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00009832_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 181aa MW: 20321 Da PI: 6.2565

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00009832_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	26.6	1.6e-08	1	49	45	93
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 ++k+++e +r+++++slv+eA +r++dPv G +g ++ + +l++ k++ FANhyb_icon00009832_a.1.g00001.1 1 MVKNANEANRRKVVDSLVWEALCRQKDPVLGPYGEYRMIFDELKTYKSH 49 6789999***************************999999998888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	4.3E-6	1	48	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MVKNANEANR RKVVDSLVWE ALCRQKDPVL GPYGEYRMIF DELKTYKSHE NQTVPLQVQK 60 GMCYKSLTDL VAWNYETNGI SNGMNGGNGI ATTNSLDYDL QVNENVRIDS VPPYGYPLTC 120 EQEIALEKIK QVKMAADSIV VPVVHQQGHS INNINQQYYI SGQLNQIIGK PLERTIWGGG 180 S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004305435.2	1e-129	PREDICTED: LOB domain-containing protein 2-like
TrEMBL	A0A2P6RUF0	1e-121	A0A2P6RUF0_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004305435.1	1e-129	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12722	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-15	LOB domain-containing protein 2