PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00010169_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

C3H

Protein Properties

Length: 74aa MW: 7707.84 Da PI: 9.2924

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00010169_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	42.8	8.5e-14	30	53	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++tGtCkyG++C+F H+p FANhyb_icon00010169_a.1.g00001.1 30 VICVYYLKTGTCKYGASCRFDHPP 53 68********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.986	26	54	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8E-8	26	53	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.22E-7	30	53	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-10	30	53	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.5E-7	31	51	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
PAVPLSTTKP SQQENVKLTL AGLPRREGAV ICVYYLKTGT CKYGASCRFD HPPPGEVVAM 60 AASQAKSDST GGKA

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269\|PubMed:11595801, ECO:0000269\|PubMed:12530963}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024199054.1	1e-44	zinc finger CCCH domain-containing protein 37-like isoform X2
Refseq	XP_024199520.1	4e-43	zinc finger CCCH domain-containing protein 37-like isoform X1
Refseq	XP_024199521.1	3e-43	zinc finger CCCH domain-containing protein 37-like isoform X2
Refseq	XP_024199522.1	2e-43	zinc finger CCCH domain-containing protein 37-like isoform X3
Refseq	XP_024199523.1	2e-43	zinc finger CCCH domain-containing protein 37-like isoform X4
Swissprot	Q941Q3	1e-22	C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBL	A0A2P6Q7V2	5e-42	A0A2P6Q7V2_ROSCH; Putative transcription factor C3H family
TrEMBL	A0A2P6Q7X9	7e-42	A0A2P6Q7X9_ROSCH; Putative transcription factor C3H family
TrEMBL	A0A2P6Q7Y6	1e-40	A0A2P6Q7Y6_ROSCH; Putative transcription factor C3H family
STRING	XP_004295542.1	3e-42	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7558	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	6e-25	floral homeotic protein (HUA1)