PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00010807_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 108aa    MW: 12435.5 Da    PI: 10.3056
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00010807_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.2e-181461148
                                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                      +g+WT+eEd++lv+ +  +G  +W+++++  g++R++k+c++rw +yl
  FANhyb_icon00010807_a.1.g00001.1 14 KGPWTAEEDKKLVNFILTHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                                      79********************************************97 PP
2Myb_DNA-binding46.77.4e-1572108644
                                       HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
                   Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                                       + E++l +d+++ lG++ W++Ia++++ gRt++++k++w
  FANhyb_icon00010807_a.1.g00001.1  72 EAEEQLVIDLHASLGNR-WSKIAARLP-GRTDNEIKNHW 108
                                       78***************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-23562IPR009057Homeodomain-like
PROSITE profilePS5129414.483961IPR017930Myb domain
SuperFamilySSF466893.41E-2811108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002492.2E-161461IPR001005SANT/Myb domain
CDDcd001671.01E-91661No hitNo description
PROSITE profilePS5129424.0162108IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2063108IPR009057Homeodomain-like
SMARTSM007174.4E-666108IPR001005SANT/Myb domain
CDDcd001672.14E-971108No hitNo description
PfamPF002495.0E-1372108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLVNFIL THGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL NEAEEQLVID LHASLGNRWS KIAARLPGRT DNEIKNHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27141087100B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307827.12e-75PREDICTED: protein ODORANT1-like
RefseqXP_024174525.12e-75protein ODORANT1-like
SwissprotQ50EX67e-71ODO1_PETHY; Protein ODORANT1
TrEMBLA0A2P6SMG85e-74A0A2P6SMG8_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004307827.17e-75(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.17e-73myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]