PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00011018_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

HD-ZIP

Protein Properties

Length: 181aa MW: 20069 Da PI: 6.5465

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00011018_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.5	2.7e-19	129	181	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 +k+ ++tkeq Le+lF+ ++++++++++eLA+kl+L+ rqV vWFqNrRa+ FANhyb_icon00011018_a.1.g00001.1 129 KKKLRLTKEQSLLLEDLFKDQHTLNTRQKQELAQKLNLSARQVEVWFQNRRAR 181 788899*********************************************98 PP
2	HD-ZIP_I/II	69	1e-22	129	181	1	53
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rl+keq+ lLE+ F+ +++L++++K+ela++L+l++rqv+vWFqnrRAR FANhyb_icon00011018_a.1.g00001.1 129 KKKLRLTKEQSLLLEDLFKDQHTLNTRQKQELAQKLNLSARQVEVWFQNRRAR 181 59**************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	2.3E-19	4	100	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	7.0E-19	114	179	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.22E-18	115	181	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.508	125	181	IPR001356	Homeobox domain
SMART	SM00389	1.1E-9	127	181	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	129	181	IPR001356	Homeobox domain
CDD	cd00086	3.42E-14	129	181	No hit	No description
PRINTS	PR00031	9.4E-5	156	165	IPR000047	Helix-turn-helix motif
PRINTS	PR00031	9.4E-5	165	181	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
RNKMSDKNDE LGLSLGLGLG YGANRSSSFS SFHLNLMQNP PDTTLNLQRV FGFTDRNATS 60 FRRVIDVNQL PAAVGDFDDE NGVSSPNSTV SSQSGKRSER GDENEAERTS CSLGGSDDED 120 GNGGGDTSKK KLRLTKEQSL LLEDLFKDQH TLNTRQKQEL AQKLNLSARQ VEVWFQNRRA 180 R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	133	SKKKLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004306997.1	1e-127	PREDICTED: homeobox-leucine zipper protein HAT3 isoform X2
Swissprot	P46602	1e-42	HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBL	A0A2P6SF63	1e-72	A0A2P6SF63_ROSCH; Putative transcription factor HD-ZIP family
STRING	XP_004306997.1	1e-126	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF32816	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	4e-27	homeobox-leucine zipper protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530]