PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00011202_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 249aa MW: 29072 Da PI: 8.7992

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00011202_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	258.2	3e-79	2	248	92	337
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166 k+ + aN++I +a+e++e++HiiDf+i qG+QWpaL++ L+ Rp+gpp+lRiTg++ sg +e+++etg+rLa FANhyb_icon00011202_a.1.g00001.1 2 KMMMIFANHMIIKAAEKAETLHIIDFGIRQGFQWPALIHCLSRRPGGPPKLRITGLELTLSGchPEETVQETGHRLA 78 778899**************************************************8887999******** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243 +++++++vpfe+ + +ak++e+l+l+e++v+++E+laVn+ + ++llde+v ++s+rd+vL+++++l+P+++v + FANhyb_icon00011202_a.1.g00001.1 79 NYCKRFNVPFEYYA-IAKKWETLQLDEFKVQRNEVLAVNCLCRFKYLLDETVMVNSPRDTVLNIIRKLNPDIFVQSV 154 **********.7********************************************************* PP GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 + +h+++ F+ rf eal ++salfd l+++lpre++ r E+e++gre++n+vaceg +r+ r et+++W+ r + FANhyb_icon00011202_a.1.g00001.1 155 VNGSHDAPFFVPRFREALFHFSALFDLLDTTLPREDQVRLGFEKEFIGREVMNIVACEGINRIVRPETYKQWQIRNM 231 ************************************************************************* PP GRAS 321 eaGFkpvplsekaakqa 337 +aGF+ +pl++++++++ FANhyb_icon00011202_a.1.g00001.1 232 RAGFRLLPLDYEVVNKI 248 ********9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	50.319	1	249	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-76	2	248	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MKMMMIFANH MIIKAAEKAE TLHIIDFGIR QGFQWPALIH CLSRRPGGPP KLRITGLELT 60 LSGCHPEETV QETGHRLANY CKRFNVPFEY YAIAKKWETL QLDEFKVQRN EVLAVNCLCR 120 FKYLLDETVM VNSPRDTVLN IIRKLNPDIF VQSVVNGSHD APFFVPRFRE ALFHFSALFD 180 LLDTTLPRED QVRLGFEKEF IGREVMNIVA CEGINRIVRP ETYKQWQIRN MRAGFRLLPL 240 DYEVVNKIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-37	1	240	109	334	Protein SCARECROW
5b3h_A	9e-37	1	240	108	333	Protein SCARECROW
5b3h_D	9e-37	1	240	108	333	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004294644.1	1e-177	PREDICTED: scarecrow-like protein 14
Refseq	XP_011461309.1	1e-180	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	1e-110	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P6QIZ7	1e-157	A0A2P6QIZ7_ROSCH; Putative transcription factor GRAS family
STRING	XP_004294644.1	1e-177	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-113	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]