PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00011864_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 86aa    MW: 9679.85 Da    PI: 4.1756
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00011864_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind361.9e-114586243
                                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH CS
                      HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk 43
                                      Fl+k+y++++d+++++++sws+ g sfvv+d+++f  ++Lp+
  FANhyb_icon00011864_a.1.g00001.1 45 FLNKTYDMVDDPSTNRIVSWSRAGGSFVVWDPHSFVMNLLPR 86
                                      9**********************************9999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-133886IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.43E-114186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004150.00224186IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.7E-94585IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-64568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.6E-68386IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MNYLYPVKEE YLGDSSTSQY WSGDPLVVAP PQPMEGLNDT GPPPFLNKTY DMVDDPSTNR  60
IVSWSRAGGS FVVWDPHSFV MNLLPR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290633.17e-55PREDICTED: heat stress transcription factor A-7a
SwissprotQ338B02e-24HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A1W6LWM88e-56A0A1W6LWM8_FRAAN; Heat shock transcription factor protein 5
STRINGXP_004290633.13e-54(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.14e-25heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]