PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00012135_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 86aa MW: 9498.16 Da PI: 9.4658

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00012135_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	83.8	2.5e-26	4	86	1	78
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C++lr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+y FANhyb_icon00012135_a.1.g00001.1 4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPENLRPAIFRSLLYEACGRIVNPIY 82 6****************************************************************************** PP DUF260 75 Gavg 78 G+vg FANhyb_icon00012135_a.1.g00001.1 83 GSVG 86 *997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.332	3	86	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.8E-22	4	86	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEN 60 LRPAIFRSLL YEACGRIVNP IYGSVG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693111.1	6e-58	PREDICTED: LOB domain-containing protein 41
Refseq	XP_026380916.1	6e-58	LOB domain-containing protein 41-like
Refseq	XP_026386660.1	7e-58	LOB domain-containing protein 41-like
Swissprot	Q9M886	5e-55	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2U1PPB1	2e-56	A0A2U1PPB1_ARTAN; Lateral organ boundaries domain-containing protein
STRING	XP_010693111.1	2e-57	(Beta vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-57	LOB domain-containing protein 41