PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00013032_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GATA
Protein Properties Length: 47aa    MW: 5430.17 Da    PI: 9.4273
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00013032_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA29.41.1e-092443120
                              GATA  1 CsnCgttkTplWRrgpdgnk 20
                                      C  C ttkTplWR+g dg+ 
  FANhyb_icon00013032_a.1.g00001.1 24 CKECYTTKTPLWRKGADGKN 43
                                      9*****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.7121847IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-51942No hitNo description
Gene3DG3DSA:3.30.50.106.1E-82243IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.0E-72443IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 47 aa     Download sequence    Send to blast
MQLRSQRSIM VEESGEETSP MRRCKECYTT KTPLWRKGAD GKNVSHS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304874.13e-20PREDICTED: GATA transcription factor 23-like
STRINGXP_004304874.11e-19(Fragaria vesca)