PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00013202_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 106aa MW: 11332.3 Da PI: 12.0858

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00013202_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00033	49	73	25	54
CTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 25 ellPkaskapskKlsKaeiLekAveYIksL 54 +l+P + +K s iLe+A++YI L FANhyb_icon00013202_a.1.g00001.1 49 RLVPGC-----RKQSLPVILEEATDYIAAL 73 556655.....899999**********988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.524	24	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-6	43	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-7	43	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
IKFRQNRKQQ SAAAAPTGAG KLKKQKFSVF RLKGKGLPAV QRKVRVLGRL VPGCRKQSLP 60 VILEEATDYI AALEMQVRAM SRLTQLLSVS GSTSGAGGSG SWPPPS

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical bHLH transcription factor probably unable to bind DNA. Negatively regulates brassinosteroid signaling. {ECO:0000269\|PubMed:20023194}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024197449.1	4e-48	transcription factor bHLH147-like
Swissprot	Q9LSN7	3e-29	BH147_ARATH; Transcription factor bHLH147
TrEMBL	A0A2P6QZD7	9e-47	A0A2P6QZD7_ROSCH; Putative transcription factor bHLH family
STRING	XP_008223381.1	2e-45	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1387	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06590.2	4e-27	bHLH family protein

Publications ? help Back to Top
Nanjo T, et al. Toxicity of free proline revealed in an arabidopsis T-DNA-tagged mutant deficient in proline dehydrogenase. Plant Cell Physiol., 2003. 44(5): p. 541-8 [PMID:12773641] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]