PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00013945_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 263aa    MW: 29117.8 Da    PI: 4.4648
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00013945_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.21e-1658055128
                               NAM  55 ekewyfFskrdkkyatgk....rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmhey 126
                                       + ewyfFs+r  k++++k       r+t +  Wk++gkd++++ + +++++g k++L+fy   a + +ktdWv+hey
  FANhyb_icon00013945_a.1.g00001.1   5 DMEWYFFSPRVFKHSNSKsqstMIDRTTGEDSWKKQGKDRRITGAcSDKQIGGKRILTFYL--A-NKQKTDWVIHEY 78 
                                       569*****998888765411115567899999***********9988899**********4..3.3368******** PP

                               NAM 127 rl 128
                                        l
  FANhyb_icon00013945_a.1.g00001.1  79 YL 80 
                                       87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.5741100IPR003441NAC domain
PfamPF023652.5E-9479IPR003441NAC domain
SuperFamilySSF1019413.01E-18598IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
ADSPDMEWYF FSPRVFKHSN SKSQSTMIDR TTGEDSWKKQ GKDRRITGAC SDKQIGGKRI  60
LTFYLANKQK TDWVIHEYYL TKADSDEQIG DFVLCRLKNH LKKKSGKSEH DRQDAPLCDG  120
GEPSSGSCSM AFNVEDQASS ELGNVVVIPN GNVDEAEHGG GSCSMTLYVE SPASKQLENV  180
LLNPYGNNDD TEHGHIVSGM LTEAEEYQGF KEPRDALFES GGNEQGLRGS ETAPCYIDKN  240
DFSVSVEGQP DSYNSPDSEM VEE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468876.11e-175PREDICTED: NAC domain-containing protein 4-like isoform X1
RefseqXP_011468877.11e-175PREDICTED: NAC domain-containing protein 4-like isoform X2
TrEMBLA0A2P6SIX81e-115A0A2P6SIX8_ROSCH; Putative transcription factor NAM family
STRINGXP_004307326.11e-111(Fragaria vesca)
STRINGXP_004308753.11e-111(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16106410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.14e-16NAC domain containing protein 32