PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00014227_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 195aa MW: 22188.7 Da PI: 4.404

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00014227_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.6	1.2e-16	14	72	28	86
trihelix 28 kplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +p+W+ +s+++r+rg++r+p+qC+++w+nl ++kki+++e++ + e++s +++ ++l+ FANhyb_icon00014227_a.1.g00001.1 14 EPKWDLISSFCRQRGVSRGPVQCRKRWSNLLVDFKKIRNWESQIKGEAESFWVMRNDLR 72 79******************************************999999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-7	15	67	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
GRRSIAALGK DPVEPKWDLI SSFCRQRGVS RGPVQCRKRW SNLLVDFKKI RNWESQIKGE 60 AESFWVMRND LRRDKKLPGF FDREVYDVLD GKDVTATPAF PLAVMFPVPL NSMLMEDASH 120 ATMEAAAEEE EEEDAEEEEP EKFFNSIRND STEDGLFSDF EESGQEETAI NSKKEQKVTE 180 SPTKTFTTPV STPGD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004298526.1	1e-119	PREDICTED: uncharacterized protein LOC101311089
Swissprot	Q8VZ20	4e-43	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2P6P4M1	1e-105	A0A2P6P4M1_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004298526.1	1e-119	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	3e-45	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]