PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00014379_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 96aa    MW: 10991.3 Da    PI: 9.2908
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00014379_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS38.61.5e-12490306373
                              GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllr........kvksdgyrveee................sgsl 358
                                       r+ +++ e+W++r+e+ GF+ v+ls+k   qa+lll+        ++++dg     +                  +l
  FANhyb_icon00014379_a.1.g00001.1   4 RKTEKSTETWKARMESHGFEGVNLSSKSKIQARLLLKirthycplQFEGDG-----SngsstaagfrvferddGRTL 75 
                                       45567789***************************9833222222222222.....022223333334444535566 PP

                              GRAS 359 vlgWkdrpLvsvSaW 373
                                        lgW+dr L++vSaW
  FANhyb_icon00014379_a.1.g00001.1  76 SLGWQDRYLLTVSAW 90 
                                       6************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.4E-10490IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MEDRKTEKST ETWKARMESH GFEGVNLSSK SKIQARLLLK IRTHYCPLQF EGDGSNGSST  60
AAGFRVFERD DGRTLSLGWQ DRYLLTVSAW HCHRVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004292490.11e-63PREDICTED: scarecrow-like protein 18
TrEMBLA0A2P6PR663e-58A0A2P6PR66_ROSCH; Putative transcription factor GRAS family
STRINGXP_004292490.14e-63(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-10GRAS family protein