PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00014390_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 222aa MW: 23707 Da PI: 8.1485

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00014390_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.7	2.1e-29	10	110	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardP 72 +C++C+vlr++C++ Cvl+ ++ p++q +++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r+ +P FANhyb_icon00014390_a.1.g00001.1 10 SCNGCRVLRKGCSETCVLRSCLrwidsPESQGHATLFLAKFFGRSDLLSFISAVPENQRPALFQSLLFEACGRTVNP 86 6************************************************************************** PP DUF260 73 vyGavgvilklqqqleqlkaelal 96 v+Gavg+++++++++++++++++l FANhyb_icon00014390_a.1.g00001.1 87 VSGAVGLLSSGNWHVCHAAVQTVL 110 ***************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.05	9	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-25	10	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
PEFDRTAKMS CNGCRVLRKG CSETCVLRSC LRWIDSPESQ GHATLFLAKF FGRSDLLSFI 60 SAVPENQRPA LFQSLLFEAC GRTVNPVSGA VGLLSSGNWH VCHAAVQTVL SGGVLRPLPA 120 MLTPNLDESS QVTINRGSCG IQNLRYTSVP SMFYDDVEPL DVGLSLKPNL AAAGGRGRAR 180 GWSCAVDRMR DTVSFSSEDS VMTTSGGGGG SDGGRKLLNL FV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004290959.1	1e-151	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SZE8	4e-62	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A2P6Q0V7	1e-118	A0A2P6Q0V7_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004290959.1	1e-151	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-64	LOB domain-containing protein 39