PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00015119_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 67aa    MW: 7412.51 Da    PI: 10.3836
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00015119_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.46.6e-121155145
                                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                      ++i+++  r v fs+Rr+g++KKA+ L    +  +a+ ++s+tg+
  FANhyb_icon00015119_a.1.g00001.1 11 EQISDYQSRMVAFSRRRTGLFKKAQKLEDISGSSIAIAVISETGQ 55
                                      579****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.9E-9362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.222363IPR002100Transcription factor, MADS-box
CDDcd001206.06E-15462No hitNo description
SuperFamilySSF554556.54E-15464IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-9525IPR002100Transcription factor, MADS-box
PfamPF003192.6E-131357IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-92540IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-94061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MGSGKKKIDI EQISDYQSRM VAFSRRRTGL FKKAQKLEDI SGSSIAIAVI SETGQPYLHG  60
SPSLLER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470988.11e-39PREDICTED: MADS-box transcription factor pvg4-like
TrEMBLA0A2P6Q3027e-37A0A2P6Q302_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_006442526.17e-18(Citrus clementina)
STRINGXP_006442528.16e-18(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1648159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-10AGAMOUS-like 29