PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00015514_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

ZF-HD

Protein Properties

Length: 141aa MW: 14889.3 Da PI: 7.859

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00015514_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	93.6	1.7e-29	9	60	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y+eCl+NhAaslG++a+DGCgEf+ + +++++ +l+CaACgCHRnFHRr + FANhyb_icon00015514_a.1.g00001.1 9 DVYRECLRNHAASLGSYATDGCGEFTLD--DTSSPGGLQCAACGCHRNFHRRVT 60 58***********************8..5578****************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.9E-24	10	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-23	11	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-17	11	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.885	11	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MEGENSSNDV YRECLRNHAA SLGSYATDGC GEFTLDDTSS PGGLQCAACG CHRNFHRRVT 60 YAPGVGRSSG AAGTAHHRVI SCSSRGGRGD LHHDMMTSQE LIDYNVGGGG GAAARQMMVV 120 ESPDSGDRSG SGRKRFRSKF T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004299496.1	1e-100	PREDICTED: zinc-finger homeodomain protein 10-like
TrEMBL	A0A2P6P1P4	7e-84	A0A2P6P1P4_ROSCH; Putative transcription factor ZF-HD family
STRING	XP_004299496.1	2e-99	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7982	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69600.1	7e-19	zinc finger homeodomain 1