PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00015805_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 177aa    MW: 20623.2 Da    PI: 5.5569
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00015805_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.24.6e-25161259
                                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                              WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                                      dDg++WrKYGqK++ ++ +prsY+rC+++   gC+++k+v++ ++dp+++ +tY g+H+++
  FANhyb_icon00015805_a.1.g00001.1  1 DDGHAWRKYGQKQILNAWHPRSYFRCSHKyeqGCKATKQVQKVEDDPSLFRTTYFGNHTCN 61
                                      7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007747.8E-35162IPR003657WRKY domain
PROSITE profilePS5081120.403158IPR003657WRKY domain
SuperFamilySSF1182902.22E-23162IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-24161IPR003657WRKY domain
PfamPF031067.0E-25160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
DDGHAWRKYG QKQILNAWHP RSYFRCSHKY EQGCKATKQV QKVEDDPSLF RTTYFGNHTC  60
NHSLLKSPEL ILDNVIGGSP IEESNSMFTI TFENNNLPYE QEHPFFSSNT SIERKIIKSN  120
HVASSQSLSC DYLVQRDQPM LFESSERINC RLPEMTELQS EDMAMMEYFA QEILPML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-25160968OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305075.11e-101PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A2P6R8D57e-85A0A2P6R8D5_ROSCH; Putative transcription factor WRKY family
STRINGXP_004305075.11e-100(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-29WRKY DNA-binding protein 70