PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00016347_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

GRAS

Protein Properties

Length: 99aa MW: 11675.5 Da PI: 10.0241

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00016347_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	71.3	1.9e-22	2	94	281	373
GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357 r E+e++gre+vn+vaceg+er+ r et+++W+ r ++aGF+++ l+ ++++++k +++ ++ + v+e+ + FANhyb_icon00016347_a.1.g00001.1 2 MRLGFEKEFIGREVVNIVACEGTERTVRPETYKQWQVRNMRAGFRQLLLDREVMNKIKDKVKMGYNPDFVVDEDGRW 78 56778**********************************************************999***** PP GRAS 358 lvlgWkdrpLvsvSaW 373 +++gWk+r ++ +W FANhyb_icon00016347_a.1.g00001.1 79 MLQGWKGRIMFGSACW 94 ************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	14.684	1	75	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.5E-20	2	94	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
QMRLGFEKEF IGREVVNIVA CEGTERTVRP ETYKQWQVRN MRAGFRQLLL DREVMNKIKD 60 KVKMGYNPDF VVDEDGRWML QGWKGRIMFG SACWAPSKS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024157168.1	2e-59	scarecrow-like protein 14
Swissprot	Q9XE58	6e-42	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2P6QIY8	4e-58	A0A2P6QIY8_ROSCH; Putative transcription factor GRAS family
STRING	XP_008223833.1	1e-50	(Prunus mume)
STRING	XP_009375902.1	1e-50	(Pyrus x bretschneideri)
STRING	XP_004294644.1	8e-51	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14801	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	2e-44	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]