PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00016677_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 81aa    MW: 9874.52 Da    PI: 10.7422
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00016677_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-18552148
                                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                      +g+WT+eEd ll ++++++G g+W++++   g++R++k+c+ rw++yl
  FANhyb_icon00016677_a.1.g00001.1  5 KGSWTKEEDHLLRNYIEKHGEGRWHKVPLQAGLNRCRKSCRMRWLNYL 52
                                      799********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.815156IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-24255IPR009057Homeodomain-like
SMARTSM007176.5E-14454IPR001005SANT/Myb domain
PfamPF002494.5E-17552IPR001005SANT/Myb domain
SuperFamilySSF466897.01E-22679IPR009057Homeodomain-like
CDDcd001672.08E-9752No hitNo description
Gene3DG3DSA:1.10.10.605.7E-55679IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MKVRKGSWTK EEDHLLRNYI EKHGEGRWHK VPLQAGLNRC RKSCRMRWLN YLKPNIKRGD  60
FEEDEVDLMI RLRKLLGNRQ V
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024180245.11e-47transcription factor MYB114-like
SwissprotQ9FNV98e-35MY113_ARATH; Transcription factor MYB113
TrEMBLA0A346MMU92e-49A0A346MMU9_ROSRU; MYB113 protein
STRINGXP_004304847.18e-51(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-37myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]