PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00016851_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 146aa    MW: 17251.5 Da    PI: 8.4689
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00016851_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.83.5e-26151443112
                               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...............kvkaeekewyfFskr 64 
                                       +Gf   P+deel+++yL+kk ++++ e++ +i+e+d++k+eP+dLp+               ++++ + ewyfFs+r
  FANhyb_icon00016851_a.1.g00001.1  15 KGFPVPPSDEELLSHYLQKKNQREDPEITAIIPEIDMTKHEPRDLPAlvfaraefldrewftMADSPDMEWYFFSPR 91 
                                       699999**********************999***************66899999999998755555677******99 PP

                               NAM  65 dkkyatgk....rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgr 112
                                         k++++k       r+tk+g Wk++gkd++++ + +++++g +++L+fy ++
  FANhyb_icon00016851_a.1.g00001.1  92 VFKHSNSKsqstMIDRTTKEGSWKKQGKDRRITGAcSDKQIGGRRILTFYLEN 144
                                       88887544111156788****************9988899**********544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-2210144IPR003441NAC domain
PROSITE profilePS5100528.40113146IPR003441NAC domain
PfamPF023651.4E-1316143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
RLSERDELRW LLTSKGFPVP PSDEELLSHY LQKKNQREDP EITAIIPEID MTKHEPRDLP  60
ALVFARAEFL DREWFTMADS PDMEWYFFSP RVFKHSNSKS QSTMIDRTTK EGSWKKQGKD  120
RRITGACSDK QIGGRRILTF YLENKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308753.12e-77PREDICTED: NAC domain-containing protein 18-like
TrEMBLA0A2P6SC504e-67A0A2P6SC50_ROSCH; Putative transcription factor NAM family
STRINGXP_004308753.16e-77(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16106410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.13e-20NAC domain containing protein 86