PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00018634_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 164aa    MW: 18141.9 Da    PI: 9.1497
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00018634_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-067697325
                                      S---SGGGGTS--TTTTT-SS-S CS
                           zf-CCCH  3 telCrffartGtCkyGdrCkFaH 25
                                      ++ C+f+a  G C  G+rC++ H
  FANhyb_icon00018634_a.1.g00001.1 76 ERVCKFWAD-GKCVKGERCPYLH 97
                                      689******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.5923662IPR000571Zinc finger, CCCH-type
SMARTSM00356243761IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.40473100IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-47599IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-47797IPR000571Zinc finger, CCCH-type
SuperFamilySSF509981.73E-1181155IPR011047Quinoprotein alcohol dehydrogenase-like superfamily
Gene3DG3DSA:2.130.10.104.2E-1299155IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.7E-7104143IPR001680WD40 repeat
PfamPF004008.2E-8108143IPR001680WD40 repeat
PROSITE profilePS5029413.817111152IPR017986WD40-repeat-containing domain
PROSITE profilePS5008215.154111152IPR001680WD40 repeat
PROSITE patternPS006780130144IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
GFRLPDPIPL PPIFSTFSSP TDSPDSVWVV SLANSTMSQT VCKFWAMSRC MNKRFPYLHP  60
AQKSPPVISQ EKAKAERVCK FWADGKCVKG ERCPYLHTWF RGDGFSFLTK LQGHKKGITG  120
IALPDNSSYL YSATKDGTVR VWDCNTGQCS KVINLGAEAG CLIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301390.15e-79PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ25e-36C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2P6QT982e-55A0A2P6QT98_ROSCH; Putative transcription factor C3H family
STRINGXP_004301390.12e-78(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1463658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.12e-38zinc finger WD40 repeat protein 1