PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00018951_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 162aa    MW: 18975.1 Da    PI: 10.2237
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00018951_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.14.5e-161116390
                              FAR1   3 YneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk.........................teker 52 
                                       Y+ Y+  +GFs+rk+k+ k   +  + +++r ++Cskeg+ ++ +++                         ++   
  FANhyb_icon00018951_a.1.g00001.1   1 YSYYGFIMGFSIRKNKMDKLvvNGVEVVVRRSWNCSKEGYCKQLRNNkqppfeyeeggkikrnvfsdkckgkKKAVF 77 
                                       899****************9555556799**********9998888789******************9987555556 PP

                              FAR1  53 rtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                                       r+ + +r gC+a l vk++k +g ++v+k++++HnHela
  FANhyb_icon00018951_a.1.g00001.1  78 REIKYSRSGCRALLWVKLNKkSGLYHVSKFVTDHNHELA 116
                                       688999*************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-131116IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
YSYYGFIMGF SIRKNKMDKL VVNGVEVVVR RSWNCSKEGY CKQLRNNKQP PFEYEEGGKI  60
KRNVFSDKCK GKKKAVFREI KYSRSGCRAL LWVKLNKKSG LYHVSKFVTD HNHELAQVSE  120
RYLLRSNRHV LIQDIYEVQT LREAQVSTSA AIYIYCVPIG MF
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1761223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-08FAR1-related sequence 5