PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00019596_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 85aa MW: 9348.64 Da PI: 10.1105

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00019596_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27	1e-08	26	72	3	45
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45 W+ e ++a k l+++ +W+++a+ ++ g+t+ qck ++ FANhyb_icon00019596_a.1.g00001.1 26 VWSDEQVRAMIQAMKILPKElsggaRWERVAAAVP-GKTAIQCKKKYA 72 7***************99***********.********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.75E-9	22	77	IPR009057	Homeodomain-like
SMART	SM00717	0.0023	23	77	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-8	24	82	IPR009057	Homeodomain-like
Pfam	PF00249	3.4E-6	26	72	IPR001005	SANT/Myb domain
CDD	cd00167	1.49E-6	27	71	No hit	No description
PROSITE profile	PS50090	6.737	27	75	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
PSPPPNNDQK PESGTTLLSN SEQDDVWSDE QVRAMIQAMK ILPKELSGGA RWERVAAAVP 60 GKTAIQCKKK YALLRENLRS KKSSA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024181653.1	2e-29	dnaJ homolog subfamily C member 2-like
TrEMBL	A0A2P6RLR2	4e-28	A0A2P6RLR2_ROSCH; Putative transcription factor MYB/SANT family
STRING	XP_004289079.1	4e-33	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF33053	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	2e-18	DnaJ domain ;Myb-like DNA-binding domain