PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00019749_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 54aa MW: 5944.72 Da PI: 4.7425

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00019749_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	58.9	1.5e-18	1	53	45	97
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 + ++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+ +l+++la++ FANhyb_icon00019749_a.1.g00001.1 1 MFQDLPESQRADAVSSMVYEANARLRDPVYGCAGAICNLQKQVTELQSQLAKA 53 67899*********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.752	1	54	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-17	1	54	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 54 aa Download sequence Send to blast
MFQDLPESQR ADAVSSMVYE ANARLRDPVY GCAGAICNLQ KQVTELQSQL AKAQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-15	1	54	55	108	LOB family transfactor Ramosa2.1
5ly0_B	1e-15	1	54	55	108	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307415.1	1e-29	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-23	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	D7TME5	3e-26	D7TME5_VITVI; Uncharacterized protein
STRING	XP_004307415.1	4e-29	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25860	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	5e-26	LOB domain-containing protein 1