PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00019801_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 128aa    MW: 14912.2 Da    PI: 10.3931
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00019801_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.21.8e-2516101190
                              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwe 77 
                                       +fYn+YA e+GFsvr+s+++ksk+  ei++++f+C+keg++++++ +    +r++   rtgC ak+ v k+ +g + 
  FANhyb_icon00019801_a.1.g00001.1  16 EFYNKYAFEAGFSVRRSTTSKSKDGSEIIRQEFCCYKEGHSKKKTIQ---PKRRKGIVRTGCLAKIDVVKR-SGIYA 88 
                                       6***************************************9997655...8889999*************9.9**** PP

                              FAR1  78 vtkleleHnHela 90 
                                       vt++ + HnH+l+
  FANhyb_icon00019801_a.1.g00001.1  89 VTQFMEAHNHPLT 101
                                       ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2216101IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MPTKNLEFRT LEELYEFYNK YAFEAGFSVR RSTTSKSKDG SEIIRQEFCC YKEGHSKKKT  60
IQPKRRKGIV RTGCLAKIDV VKRSGIYAVT QFMEAHNHPL TSRERVHLLP SHRQVSNATK  120
CLTMELRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024156220.16e-67protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_024195605.17e-68protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067DIQ98e-31A0A067DIQ9_CITSI; Uncharacterized protein (Fragment)
STRINGXP_004291805.15e-80(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-19FAR1-related sequence 5