PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_icon00020054_a.1.g00001.1
Organism
Fragaria x ananassa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 152aa    MW: 17834.6 Da    PI: 10.6709
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_icon00020054_a.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.14.2e-3751281118
                               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgk 72 
                                       lp+G+rFhPt+eelv++yLkkk++g++  e++++i+ +d++++eP +Lp     +++ ++ ew+fF++++ ky++++
  FANhyb_icon00020054_a.1.g00001.1   5 LPVGYRFHPTEEELVNHYLKKKIHGENeSEINQIIPFIDLCEHEPAELPGllgsETEDHDMEWFFFTRNAFKYNKSR 81 
                                       799*********************9995667778***************546555555677**************** PP

                               NAM  73 rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgek 118
                                       r+nr+tk+g+Wk tgk++ ++++ +++++g k+tL+fy+gr +  +k
  FANhyb_icon00020054_a.1.g00001.1  82 RSNRSTKKGFWKITGKERGIKARrSKAVIGKKRTLTFYQGRGEAKKK 128
                                       *********************98566679*********998776554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-353126IPR003441NAC domain
PROSITE profilePS5100536.7735152IPR003441NAC domain
PfamPF023656.5E-216125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MPLSLPVGYR FHPTEEELVN HYLKKKIHGE NESEINQIIP FIDLCEHEPA ELPGLLGSET  60
EDHDMEWFFF TRNAFKYNKS RRSNRSTKKG FWKITGKERG IKARRSKAVI GKKRTLTFYQ  120
GRGEAKKKKP AGSFMSTIFL EMKLFPVRSR QR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-21314413140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111128KKRTLTFYQGRGEAKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469602.16e-85PREDICTED: NAC domain-containing protein 45-like
SwissprotF4JN352e-32NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A2P6SC392e-70A0A2P6SC39_ROSCH; Putative transcription factor NAM family
TrEMBLA0A2P6SIZ75e-71A0A2P6SIZ7_ROSCH; Putative transcription factor NAM family
STRINGXP_004308752.13e-85(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.17e-35NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]