PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

FANhyb_icon00020451_a.1.g00001.1

Organism

Fragaria x ananassa

Taxonomic ID

3747

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 74aa MW: 8188.24 Da PI: 8.5098

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
FANhyb_icon00020451_a.1.g00001.1	genome	kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.8	1.4e-09	15	46	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+ Ed+ l d+vkq G g W + +r+ g FANhyb_icon00020451_a.1.g00001.1 15 KGAWTAHEDQVLRDYVKQNGEGKWGKMSRETG 46 79**************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-10	7	44	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.679	10	43	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.72E-7	10	46	IPR009057	Homeodomain-like
Pfam	PF00249	7.6E-6	15	46	IPR001005	SANT/Myb domain
CDD	cd00167	7.26E-5	17	46	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MGRSSSRCDK EGANKGAWTA HEDQVLRDYV KQNGEGKWGK MSRETGENSL SVISTMNTAS 60 FSSMKMAEQL LIVM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004303467.1	1e-25	PREDICTED: transcription factor WER-like
TrEMBL	A0A2P6Q1G2	4e-23	A0A2P6Q1G2_ROSCH; Putative transcription factor MYB-HB-like family
TrEMBL	D6PT02	7e-23	D6PT02_ROSRU; Putative MYB transcription factor
TrEMBL	F2QKW3	4e-23	F2QKW3_ROSRU; Putative MYB transcription factor
STRING	XP_004303467.1	4e-25	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF22003	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-11	myb domain protein 3